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pyannotables

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Merge pull request #3 from gokceneraslan/dependabot/pip/pip-21.1

committed 3 years ago
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Bump pip from 18.1 to 21.1

ddependabot[bot] committed 3 years ago
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Add homoloy function and tbles

committed 4 years ago
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v0.4 Add Uniprot and Entrez IDs

committed 4 years ago
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Update README.rst

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ggokceneraslan committed 5 years ago

README

The README file for this repository.

============ pyannotables

.. image:: https://img.shields.io/pypi/v/pyannotables.svg :target: https://pypi.python.org/pypi/pyannotables

Python package for conversions between Ensembl IDs and gene names (annotables + pyranges + Ensembl GTF files)

  • Free software: Apache Software License 2.0

Installation

  • pip install pyannotables

Features

.. image:: notebook.png :scale: 30 %

Building data frames

See ./build.ipynb <https://nbviewer.ipython.org/github/gokceneraslan/pyannotables/blob/master/build.ipynb>_.

Changelog

  • v0.5: Homology mapping table and function (homology_convert) are added. tables is a function now.
  • v0.4: Entrez and UNIPROT IDs are added.
  • v0.3: Ensembl version updated to 100. NCBI transcript IDs, gene lengths and gene exon lengths are added.

Credits