GitXplorerGitXplorer
j

scgpt_experiments

public
0 stars
0 forks
0 issues

Commits

List of commits on branch main.
Verified
8eb2461e2b1a4baf6f3abe002c00a13f182a058d

refactor: Encapsulate code in functions

jjvfe committed 7 months ago
Verified
fc5db038074fc647d7ff8ed5a058273c6932691b

refactor: Add sce to conversion script

jjvfe committed 7 months ago
Verified
8823fd08bb6fbfde5d733d441b1bf087ac11bdd0

feat: Save h5ad files for every integration

jjvfe committed 8 months ago
Verified
13d7ce4a9be8bb90daacbba0eb5aa62c1cbe18f3

docs: Add a simple README

jjvfe committed 8 months ago
Verified
3b426cabb7f9345ca2a9a29144d49a05a194309c

refactor: Update test data and add evaluation

jjvfe committed 8 months ago
Verified
6a5c1af8b1db959ece3a901ee48456e054e01333

refactor: Remove unnecessary sections from notebook

jjvfe committed 8 months ago

README

The README file for this repository.

scGPT experiments

  • enviroments/
    • Conda environments to run either the convert script (sceasy.yml) or scGPT (scGPT.yml).
  • analysis
    • Contains the conversion scripts and the analysis notebooks