To run the workflow to test simply do

make run

To learn NextFlow checkout this documentation:

https://www.nextflow.io/docs/latest/index.html

In order to deploy, we have a set of deployment tools that will enable deployment to the various gnps systems. To run the deployment, use the following commands from the deploy_gnps2 folder.

make deploy-prod

You might need to checkout the module, do this by running

git submodule init
git submodule update